Source code for neuroconv.datainterfaces.ecephys.biocam.biocamdatainterface

import warnings

from pydantic import FilePath

from ..baserecordingextractorinterface import BaseRecordingExtractorInterface


[docs] class BiocamRecordingInterface(BaseRecordingExtractorInterface): """ Primary data interface class for converting Biocam data. Uses the :py:func:`~spikeinterface.extractors.read_biocam` reader from SpikeInterface. """ display_name = "Biocam Recording" associated_suffixes = (".bwr",) info = "Interface for Biocam recording data."
[docs] @classmethod def get_extractor_class(cls): from spikeinterface.extractors.extractor_classes import BiocamRecordingExtractor return BiocamRecordingExtractor
[docs] @classmethod def get_source_schema(cls) -> dict: schema = super().get_source_schema() schema["properties"]["file_path"]["description"] = "Path to the .bwr file." return schema
def __init__( self, file_path: FilePath, *args, verbose: bool = False, es_key: str = "ElectricalSeries" ): # TODO: change to * (keyword only) on or after August 2026 """ Load and prepare data for Biocam. Parameters ---------- file_path : string or Path Path to the .bwr file. verbose : bool, default: False Allows verbose. es_key: str, default: "ElectricalSeries" """ # Handle deprecated positional arguments if args: parameter_names = [ "verbose", "es_key", ] num_positional_args_before_args = 1 # file_path if len(args) > len(parameter_names): raise TypeError( f"__init__() takes at most {len(parameter_names) + num_positional_args_before_args + 1} positional arguments but " f"{len(args) + num_positional_args_before_args + 1} were given. " "Note: Positional arguments are deprecated and will be removed on or after August 2026. " "Please use keyword arguments." ) positional_values = dict(zip(parameter_names, args)) passed_as_positional = list(positional_values.keys()) warnings.warn( f"Passing arguments positionally to BiocamRecordingInterface.__init__() is deprecated " f"and will be removed on or after August 2026. " f"The following arguments were passed positionally: {passed_as_positional}. " "Please use keyword arguments instead.", FutureWarning, stacklevel=2, ) verbose = positional_values.get("verbose", verbose) es_key = positional_values.get("es_key", es_key) super().__init__(file_path=file_path, verbose=verbose, es_key=es_key)